![]() Fluorescence image analysis introduction.If you’d like to help, check out the how to help guide! Details can be found in the announcement: - The Updater moved.The content of this page has not been vetted since shifting away from MediaWiki. Johannes Schindelin got stuck with the maintainership and introduced third-party update sites (a feature that many claimed to desire, though no pinky was harmed by contributing any code) in the course of a very successful hackathon at the Lawrence Berkeley National Laboratory in October 2010 and another one in February 2011 hosted by LOCI.Īs of September 2012, the Fiji Updater has moved to ImageJ2. In the course of one of two successful Google Summer of Code projects, the updater was rewritten from scratch (but in a backwards-compatible manner) by Yap Chin Kiet under the mentorship of Mark Longair and Johannes Schindelin in 2009. The original updater was written in a frantic week in October 2008 in preparation for the first public Fiji release, to be able to keep Fiji up-to-date. The bootstrap.js script was originally intended to fix broken Fiji installations, and was subsequently enhanced to initialize the updater in an ImageJ 1.x-only directory – or even from a complete fresh state. This uses the jrunscript executable of your Java installation to run the Javascript file tracked in ImageJ’s source code repository. If you call that without arguments, it will show you what subcommands are available: It is possible to drive the Updater through the command-line option -update. You can also set up and populate your own update site. If you want to update plugins from other update sites than the principal one, follow these instructions. Just click on the Help › Update… menu item: This is useful when the Updater’s byte-code analyzer detects wrong dependencies for a particular file. Just delete the dependency lines you don’t want, or type new ones that you do want. While in the advanced mode, you can edit a file’s dependencies directly by making changes in the right-hand Details pane. Snapshot_of_the_Advanced_Mode_of_the_Updater.png Editing dependencies To save the changes, you have to upload the plugin to the server. The details for each component can be edited by writing below the respective entry. Note: in the advanced mode you can also upload plugins to your update site. ![]() In the advanced mode, you can see details about the files, choose to skip updating selected components, and search by filename. You can keep the local version if you are certain that the version you have is new enough to work with the plugin noted under the text A newer version might be required by, otherwise you should consider to choose *Update * instead. the Updater does not know that particular version), the Updater will ask you what to do:Ī typical scenario when you can have a locally modified version of a component is when you asked the respective plugin author for a change in a certain component and got a test version that you installed manually. If you have a locally modified version of the dependency (i.e. For example, the Simple Neurite Tracer needs the 3D Viewer. Some plugins require other components to be updated. You can read about technical details here. The easy mode looks like this:įor technical reasons, a restart of ImageJ is required before the changes take effect. In the easy mode, you will only see the files that can be updated. ![]() The Updater has two modes, the Easy Mode and the Advanced Mode. The Updater can be run via Help › Update…. In case you do not want to run the Updater upon startup, you can choose Never. If there were updates since the Updater was run the last time, the user will be asked whether you want to run the Updater now or later: ImageJ’s files can be updated by the current user.ImageJ was started without parameters (i.e. ![]() It is automatically run when all the following conditions are met: The Updater is a mechanism to update individual packages. anybody can set up their own update site which users can follow. The ImageJ Updater can handle 3rd-party update sites, i.e. the macros, scripts, plugins and the core components (libraries) needed by the plugins. The purpose of the ImageJ Updater is to keep you up-to-date with all components of ImageJ (or Fiji), i.e. The content of this page has not been vetted since shifting away from MediaWiki.
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